Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Tyr) - Bacillales

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Tyr-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bacillus subtilis subsp. subtilis str. 168 2 2
Bacillus amyloliquefaciens FZB42 1 1
Bacillus pumilus SAFR-032 1 1
Bacillus licheniformis DSM 13 2 2
Anoxybacillus flavithermus WK1 1 1
Geobacillus kaustophilus HTA426 1 1
Bacillus cereus ATCC 14579 10 6
Bacillus halodurans C-125 1 1
Bacillus clausii KSM-K16 1 1
Oceanobacillus iheyensis HTE831 2 2
Paenibacillus sp. JDR-2 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
tyrS
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -288
score = 121.31
sequence = TGAAAAGGTAAAGAT...

Gene: BSU29670: Tyrosyl-tRNA synthetase (EC 6.1.1.1)
*
Bacillus amyloliquefaciens FZB42

Site:
position = -284
score = 132.78
sequence = CGAAAAGGTTTTGAT...

Gene: RBAM_026790: Tyrosyl-tRNA synthetase (EC 6.1.1.1)
*
Bacillus pumilus SAFR-032

Site:
position = -292
score = 133.13
sequence = TATAAAGGTTTTGAC...

Gene: BPUM_2615: Tyrosyl-tRNA synthetase (EC 6.1.1.1)
*
Bacillus licheniformis DSM 13

Site:
position = -286
score = 125.35
sequence = TCAAAAGGTGAAGAC...

Gene: BLi03118: Tyrosyl-tRNA synthetase (EC 6.1.1.1)
*
Anoxybacillus flavithermus WK1

Site:
position = -244
score = 153.27
sequence = ATCGAGCGATGAGCG...

Gene: Aflv_0464: Tyrosyl-tRNA synthetase (EC 6.1.1.1)
*
Geobacillus kaustophilus HTA426

Site:
position = -276
score = 138.84
sequence = TGAGAAAGCGATGAT...

Gene: GK2803: Tyrosyl-tRNA synthetase (EC 6.1.1.1)
*2
Bacillus cereus ATCC 14579

Site:
position = -268
score = 110.07
sequence = ATAACATACGTTGAA...

Gene: BC5062: Tyrosyl-tRNA synthetase (EC 6.1.1.1)

Site:
position = -301
score = 136.58
sequence = TAATTGAGCGTGGAA...

Gene: BC4657: Tyrosyl-tRNA synthetase (EC 6.1.1.1)
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
*
Oceanobacillus iheyensis HTE831

Site:
position = -264
score = 112.78
sequence = CTTAAATACGAAGAA...

Gene: OB2218: Tyrosyl-tRNA synthetase (EC 6.1.1.1)
*
Paenibacillus sp. JDR-2

Site:
position = -289
score = 97.0
sequence = CTTATGCGGCGAAAG...

Gene: Pjdr2_1515: Tyrosyl-tRNA synthetase (EC 6.1.1.1)
Tyrosyl-tRNA synthetase (EC 6.1.1.1)
 
CRON 2.
tyrZ
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -253
score = 136.48
sequence = CATAAGCTTTGACGG...

Gene: BSU38460: Tyrosyl-tRNA synthetase (EC 6.1.1.1)
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
*
Bacillus licheniformis DSM 13

Site:
position = -262
score = 139.4
sequence = ACCATAAGCAACGAC...

Gene: BLi00666: Tyrosyl-tRNA synthetase (EC 6.1.1.1)
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
*
Bacillus halodurans C-125

Site:
position = -282
score = 117.22
sequence = ATATTGAGCGTTGAA...

Gene: BH3228: Tyrosyl-tRNA synthetase (EC 6.1.1.1)
*
Bacillus clausii KSM-K16

Site:
position = -248
score = 110.08
sequence = TAAAAAAGCGAGGAA...

Gene: ABC2758: Tyrosyl-tRNA synthetase (EC 6.1.1.1)
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Tyrosyl-tRNA synthetase (EC 6.1.1.1)
 
CRON 3.
aroF
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU22710: Chorismate synthase (EC 4.2.3.5) # AroG
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_020870: Chorismate synthase (EC 4.2.3.5) # AroG
 
Bacillus pumilus SAFR-032

Gene: BPUM_2002: Chorismate synthase (EC 4.2.3.5) # AroG
 
Bacillus licheniformis DSM 13

Gene: BLi02406: Chorismate synthase (EC 4.2.3.5) # AroG
 
Anoxybacillus flavithermus WK1

Gene: Aflv_1098: Chorismate synthase (EC 4.2.3.5) # AroG
 
Geobacillus kaustophilus HTA426

Gene: GK2207: Chorismate synthase (EC 4.2.3.5) # AroG
*2
Bacillus cereus ATCC 14579

Site:
position = -274
score = 158.57
sequence = CATATATGCGTTGAA...

Gene: BC2941: Chorismate synthase (EC 4.2.3.5) # AroG

Gene: BC1516: Chorismate synthase (EC 4.2.3.5) # AroG
 
Bacillus halodurans C-125

Gene: BH1656: Chorismate synthase (EC 4.2.3.5) # AroG
 
Bacillus clausii KSM-K16

Gene: ABC1892: Chorismate synthase (EC 4.2.3.5) # AroG
 
Oceanobacillus iheyensis HTE831

Gene: OB1785: Chorismate synthase (EC 4.2.3.5) # AroG
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_2031: Chorismate synthase (EC 4.2.3.5) # AroG
Chorismate synthase (EC 4.2.3.5) # AroG
hisC
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU22620: Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_020780: Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9)
 
Bacillus pumilus SAFR-032

Gene: BPUM_1993: Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9)
 
Bacillus licheniformis DSM 13

Gene: BLi02397: Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_1107: Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9)
 
Geobacillus kaustophilus HTA426

Gene: GK2198: Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9)
 
Bacillus cereus ATCC 14579

Gene: BC2940: Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9)
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9)
tyrA
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU22610: Prephenate dehydrogenase (EC 1.3.1.12) # TyrAp/ACT domain, NAD-specific
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_020770: Prephenate dehydrogenase (EC 1.3.1.12) # TyrAp/ACT domain, NAD-specific
 
Bacillus pumilus SAFR-032

Gene: BPUM_1992: Prephenate dehydrogenase (EC 1.3.1.12) # TyrAp/ACT domain, NAD-specific
 
Bacillus licheniformis DSM 13

Gene: BLi02396: Prephenate dehydrogenase (EC 1.3.1.12) # TyrAp/ACT domain, NAD-specific
 
Anoxybacillus flavithermus WK1

Gene: Aflv_1108: Prephenate dehydrogenase (EC 1.3.1.12) # TyrAp/ACT domain, NAD-specific
 
Geobacillus kaustophilus HTA426

Gene: GK2197: Prephenate dehydrogenase (EC 1.3.1.12) # TyrAp/ACT domain, NAD-specific
 
Bacillus cereus ATCC 14579

Gene: BC2939: Prephenate dehydrogenase (EC 1.3.1.12) # TyrAp/ACT domain, NAD-specific
 
Bacillus halodurans C-125

Gene: BH1666: Prephenate dehydrogenase (EC 1.3.1.12) # TyrAp/ACT domain, NAD-specific
 
Bacillus clausii KSM-K16

Gene: ABC1902: Prephenate dehydrogenase (EC 1.3.1.12) # TyrAp/ACT domain, NAD-specific
 
Oceanobacillus iheyensis HTE831

Gene: OB1781: Prephenate dehydrogenase (EC 1.3.1.12) # TyrAp/ACT domain, NAD-specific
 
Paenibacillus sp. JDR-2
Prephenate dehydrogenase (EC 1.3.1.12) # TyrAp/ACT domain, NAD-specific
aroE
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU22600: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) # AroF
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_020760: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) # AroF
 
Bacillus pumilus SAFR-032

Gene: BPUM_1991: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) # AroF
 
Bacillus licheniformis DSM 13

Gene: BLi02395: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) # AroF
 
Anoxybacillus flavithermus WK1

Gene: Aflv_1109: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) # AroF
 
Geobacillus kaustophilus HTA426

Gene: GK2196: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) # AroF
 
Bacillus cereus ATCC 14579

Gene: BC2938: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) # AroF
 2
Bacillus halodurans C-125

Gene: BH2713: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) # AroF

Gene: BH1667: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) # AroF
 2
Bacillus clausii KSM-K16

Gene: ABC1221: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) # AroF

Gene: ABC1903: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) # AroF
 
Oceanobacillus iheyensis HTE831

Gene: OB1780: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) # AroF
 
Paenibacillus sp. JDR-2
5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) # AroF
 
CRON 4.
phhA
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
*
Bacillus cereus ATCC 14579

Site:
position = -390
score = 140.3
sequence = TATACGCGTTGAAAG...

Gene: BC4352: Phenylalanine-4-hydroxylase (EC 1.14.16.1) - Long
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Phenylalanine-4-hydroxylase (EC 1.14.16.1) - Long
phs
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426

Gene: GK1984: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
 
Bacillus cereus ATCC 14579

Gene: BC4353: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16

Gene: ABC4006: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
 
CRON 5.
aroA
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
*
Bacillus cereus ATCC 14579

Site:
position = -430
score = 139.89
sequence = TAGTCATGCATTGAA...

Gene: BC2942: Chorismate mutase I (EC 5.4.99.5) / 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta (EC 2.5.1.54) # AroH/AroAI beta
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Chorismate mutase I (EC 5.4.99.5) / 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta (EC 2.5.1.54) # AroH/AroAI beta
 
CRON 6.
tyrT
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
*
Bacillus cereus ATCC 14579

Site:
position = -223
score = 25.8
sequence = GTGATACATTCATTT...

Gene: BC4121: Predicted tyrosine transporter, NhaC family
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
*
Oceanobacillus iheyensis HTE831

Site:
position = -220
score = 75.24
sequence = ACAATTAGAGATTCG...

Gene: OB1118: Predicted tyrosine transporter, NhaC family
 
Paenibacillus sp. JDR-2
Predicted tyrosine transporter, NhaC family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD