Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Tyr) - Staphylococcaceae

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Tyr-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Staphylococcus aureus subsp. aureus N315 1 1
Staphylococcus capitis SK14 2 2
Staphylococcus epidermidis ATCC 12228 1 1
Staphylococcus carnosus subsp. carnosus TM300 1 1
Staphylococcus haemolyticus JCSC1435 1 1
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 1 1
Macrococcus caseolyticus JCSC5402 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
tyrS
*
Staphylococcus aureus subsp. aureus N315

Site:
position = -295
score = 80.52
sequence = TAAAGAATAGGATAA...

Gene: SA1550: Tyrosyl-tRNA synthetase (EC 6.1.1.1)
*2
Staphylococcus capitis SK14

Site:
position = -267
score = 104.37
sequence = ATTTATTGCAATGAA...

Gene: STACA0001_0751: Tyrosyl-tRNA synthetase (EC 6.1.1.1)

Site:
position = -367
score = 83.24
sequence = ATATGTTTTGGATAC...

Gene: STACA0001_0623: Tyrosyl-tRNA synthetase (EC 6.1.1.1)
*
Staphylococcus epidermidis ATCC 12228

Site:
position = -311
score = 75.76
sequence = TTTGAATATAAAGGA...

Gene: SE1406: Tyrosyl-tRNA synthetase (EC 6.1.1.1)
*
Staphylococcus carnosus subsp. carnosus TM300

Site:
position = -290
score = 77.49
sequence = ATTATATGTTTTGGA...

Gene: Sca_1335: Tyrosyl-tRNA synthetase (EC 6.1.1.1)
*
Staphylococcus haemolyticus JCSC1435

Site:
position = -278
score = 86.63
sequence = TGGATAAGAGGACAA...

Gene: SH1192: Tyrosyl-tRNA synthetase (EC 6.1.1.1)
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Site:
position = -307
score = 66.48
sequence = GGATAGAGGAGAAGT...

Gene: SSP1034: Tyrosyl-tRNA synthetase (EC 6.1.1.1)
*
Macrococcus caseolyticus JCSC5402

Site:
position = -228
score = 61.1
sequence = AAGACTTTTCGGGAC...

Gene: MCCL_1406: Tyrosyl-tRNA synthetase (EC 6.1.1.1)
Tyrosyl-tRNA synthetase (EC 6.1.1.1)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD