Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Thr) - Bacillales

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Thr-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bacillus subtilis subsp. subtilis str. 168 2 2
Bacillus amyloliquefaciens FZB42 1 1
Bacillus pumilus SAFR-032 2 2
Bacillus licheniformis DSM 13 2 2
Anoxybacillus flavithermus WK1 1 1
Geobacillus kaustophilus HTA426 1 1
Bacillus cereus ATCC 14579 7 5
Bacillus halodurans C-125 1 1
Bacillus clausii KSM-K16 2 2
Oceanobacillus iheyensis HTE831 1 1
Paenibacillus sp. JDR-2 2 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
thrS
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -292
score = 91.49
sequence = GACACACGTATTGAT...

Gene: BSU28950: Threonyl-tRNA synthetase (EC 6.1.1.3)
*
Bacillus amyloliquefaciens FZB42

Site:
position = -299
score = 80.46
sequence = GCTACACGTATTGAT...

Gene: RBAM_025990: Threonyl-tRNA synthetase (EC 6.1.1.3)
*
Bacillus pumilus SAFR-032

Site:
position = -294
score = 94.5
sequence = AGAGACCGTATTGAT...

Gene: BPUM_2539: Threonyl-tRNA synthetase (EC 6.1.1.3)
*
Bacillus licheniformis DSM 13

Site:
position = -301
score = 82.73
sequence = ATATCATGTATTGAT...

Gene: BLi03043: Threonyl-tRNA synthetase (EC 6.1.1.3)
*
Anoxybacillus flavithermus WK1

Site:
position = -291
score = 92.97
sequence = CAAAAGTGATGATGA...

Gene: Aflv_0521: Threonyl-tRNA synthetase (EC 6.1.1.3)
*
Geobacillus kaustophilus HTA426

Site:
position = -291
score = 95.93
sequence = AATACAAGCGATGAC...

Gene: GK2719: Threonyl-tRNA synthetase (EC 6.1.1.3)
*
Bacillus cereus ATCC 14579

Site:
position = -274
score = 103.13
sequence = TTGAAATGTCATGAT...

Gene: BC4576: Threonyl-tRNA synthetase (EC 6.1.1.3)
*
Bacillus halodurans C-125

Site:
position = -304
score = 108.43
sequence = TTAAATGGTTATGAT...

Gene: BH3141: Threonyl-tRNA synthetase (EC 6.1.1.3)
*
Bacillus clausii KSM-K16

Site:
position = -253
score = 73.78
sequence = ATGAAAAGTGATGAT...

Gene: ABC2697: Threonyl-tRNA synthetase (EC 6.1.1.3)
*
Oceanobacillus iheyensis HTE831

Site:
position = -279
score = 106.65
sequence = ATTATTCGTGATGAT...

Gene: OB2154: Threonyl-tRNA synthetase (EC 6.1.1.3)
*
Paenibacillus sp. JDR-2

Site:
position = -336
score = 79.32
sequence = GCAAAAAGCAATGAC...

Gene: Pjdr2_4792: Threonyl-tRNA synthetase (EC 6.1.1.3)
Threonyl-tRNA synthetase (EC 6.1.1.3)
 
CRON 2.
thrZ
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -276
score = 106.0
sequence = AATACATGCGATGAA...

Gene: BSU37560: Threonyl-tRNA synthetase (EC 6.1.1.3)
 
Bacillus amyloliquefaciens FZB42
*
Bacillus pumilus SAFR-032

Site:
position = -266
score = 99.06
sequence = TCATTGCTTTGAAAA...

Gene: BPUM_0761: Threonyl-tRNA synthetase (EC 6.1.1.3)
*
Bacillus licheniformis DSM 13

Site:
position = -322
score = 100.11
sequence = TAAAGGTTGTGAAAG...

Gene: BLi00234: Threonyl-tRNA synthetase (EC 6.1.1.3)
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
*
Bacillus cereus ATCC 14579

Site:
position = -265
score = 100.26
sequence = AATAAGCGAAGAAAA...

Gene: BC2322: Threonyl-tRNA synthetase (EC 6.1.1.3)
 
Bacillus halodurans C-125
*
Bacillus clausii KSM-K16

Site:
position = -280
score = 109.87
sequence = AGCAAGAGCGATGAA...

Gene: ABC3978: Threonyl-tRNA synthetase (EC 6.1.1.3)
 
Oceanobacillus iheyensis HTE831
*
Paenibacillus sp. JDR-2

Site:
position = -307
score = 68.75
sequence = CGAAGGCAATGACCA...

Gene: Pjdr2_1002: Threonyl-tRNA synthetase (EC 6.1.1.3)
Threonyl-tRNA synthetase (EC 6.1.1.3)
 
CRON 3.
hom
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU32260: Homoserine dehydrogenase (EC 1.1.1.3)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_029370: Homoserine dehydrogenase (EC 1.1.1.3)
 
Bacillus pumilus SAFR-032

Gene: BPUM_2888: Homoserine dehydrogenase (EC 1.1.1.3)
 
Bacillus licheniformis DSM 13

Gene: BLi03414: Homoserine dehydrogenase (EC 1.1.1.3)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_2414: Homoserine dehydrogenase (EC 1.1.1.3)
 
Geobacillus kaustophilus HTA426

Gene: GK2964: Homoserine dehydrogenase (EC 1.1.1.3)
*
Bacillus cereus ATCC 14579

Site:
position = -385
score = 114.61
sequence = AAAAAGTAATGATAA...

Gene: BC1964: Homoserine dehydrogenase (EC 1.1.1.3)
 
Bacillus halodurans C-125

Gene: BH3422: Homoserine dehydrogenase (EC 1.1.1.3)
 
Bacillus clausii KSM-K16

Gene: ABC2942: Homoserine dehydrogenase (EC 1.1.1.3)
 
Oceanobacillus iheyensis HTE831

Gene: OB0466: Homoserine dehydrogenase (EC 1.1.1.3)
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_4407: Homoserine dehydrogenase (EC 1.1.1.3)
Homoserine dehydrogenase (EC 1.1.1.3)
thrC
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU32250: Threonine synthase (EC 4.2.3.1)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_029360: Threonine synthase (EC 4.2.3.1)
 
Bacillus pumilus SAFR-032

Gene: BPUM_2887: Threonine synthase (EC 4.2.3.1)
 
Bacillus licheniformis DSM 13

Gene: BLi03413: Threonine synthase (EC 4.2.3.1)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_2413: Threonine synthase (EC 4.2.3.1)
 
Geobacillus kaustophilus HTA426

Gene: GK2963: Threonine synthase (EC 4.2.3.1)
 
Bacillus cereus ATCC 14579

Gene: BC1965: Threonine synthase (EC 4.2.3.1)
 
Bacillus halodurans C-125

Gene: BH3421: Threonine synthase (EC 4.2.3.1)
 
Bacillus clausii KSM-K16

Gene: ABC2941: Threonine synthase (EC 4.2.3.1)
 
Oceanobacillus iheyensis HTE831

Gene: OB0465: Threonine synthase (EC 4.2.3.1)
 
Paenibacillus sp. JDR-2
Threonine synthase (EC 4.2.3.1)
thrB
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU32240: Homoserine kinase (EC 2.7.1.39)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_029350: Homoserine kinase (EC 2.7.1.39)
 
Bacillus pumilus SAFR-032

Gene: BPUM_2886: Homoserine kinase (EC 2.7.1.39)
 
Bacillus licheniformis DSM 13

Gene: BLi03412: Homoserine kinase (EC 2.7.1.39)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_2412: Homoserine kinase (EC 2.7.1.39)
 
Geobacillus kaustophilus HTA426

Gene: GK2962: Homoserine kinase (EC 2.7.1.39)
 
Bacillus cereus ATCC 14579

Gene: BC1966: Homoserine kinase (EC 2.7.1.39)
 
Bacillus halodurans C-125

Gene: BH3420: Homoserine kinase (EC 2.7.1.39)
 
Bacillus clausii KSM-K16

Gene: ABC2940: Homoserine kinase (EC 2.7.1.39)
 
Oceanobacillus iheyensis HTE831

Gene: OB0464: Homoserine kinase (EC 2.7.1.39)
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_4406: Homoserine kinase (EC 2.7.1.39)
Homoserine kinase (EC 2.7.1.39)
 
CRON 4.
ykbA
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU12860: Amino acid transporter
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_012710: Amino acid transporter
 
Bacillus pumilus SAFR-032

Gene: BPUM_1179: Amino acid transporter
 
Bacillus licheniformis DSM 13

Gene: BLi01387: Amino acid transporter
 
Anoxybacillus flavithermus WK1

Gene: Aflv_1288: Amino acid transporter
 
Geobacillus kaustophilus HTA426
*
Bacillus cereus ATCC 14579

Site:
position = -303
score = 104.88
sequence = TCAAGAAGTGATGAT...

Gene: BC5013: Amino acid transporter
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Amino acid transporter
 
CRON 5.
brnQ
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
*
Bacillus cereus ATCC 14579

Site:
position = -372
score = 95.24
sequence = TATAAAAGTAATGAT...

Gene: BC4550: Threonine transporter
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Threonine transporter
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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