Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Thr) - Staphylococcaceae

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Thr-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Staphylococcus aureus subsp. aureus N315 1 1
Staphylococcus capitis SK14 1 1
Staphylococcus epidermidis ATCC 12228 1 1
Staphylococcus carnosus subsp. carnosus TM300 2 2
Staphylococcus haemolyticus JCSC1435 2 2
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 1 1
Macrococcus caseolyticus JCSC5402 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
thrS
*
Staphylococcus aureus subsp. aureus N315

Site:
position = -375
score = 92.1
sequence = AATCGTTTAAATGAT...

Gene: SA1506: Threonyl-tRNA synthetase (EC 6.1.1.3)
*
Staphylococcus capitis SK14

Site:
position = -301
score = 86.47
sequence = AACTATTGAAGATAA...

Gene: STACA0001_2343: Threonyl-tRNA synthetase (EC 6.1.1.3)
*
Staphylococcus epidermidis ATCC 12228

Site:
position = -312
score = 74.64
sequence = CGTTGAAACTATTGA...

Gene: SE1357: Threonyl-tRNA synthetase (EC 6.1.1.3)
*
Staphylococcus carnosus subsp. carnosus TM300

Site:
position = -277
score = 83.11
sequence = TAAAAAATCGAGGAT...

Gene: Sca_1289: Threonyl-tRNA synthetase (EC 6.1.1.3)
*
Staphylococcus haemolyticus JCSC1435

Site:
position = -275
score = 92.54
sequence = AATAGTTGAAGATAT...

Gene: SH1242: Threonyl-tRNA synthetase (EC 6.1.1.3)
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Site:
position = -303
score = 97.02
sequence = ATAATACGGAGACAA...

Gene: SSP1082: Threonyl-tRNA synthetase (EC 6.1.1.3)
*
Macrococcus caseolyticus JCSC5402

Site:
position = -250
score = 93.7
sequence = TATGAATAACATCAT...

Gene: MCCL_1347: Threonyl-tRNA synthetase (EC 6.1.1.3)
Threonyl-tRNA synthetase (EC 6.1.1.3)
 
CRON 2.
thrZ
 
Staphylococcus aureus subsp. aureus N315
 
Staphylococcus capitis SK14
 
Staphylococcus epidermidis ATCC 12228
*
Staphylococcus carnosus subsp. carnosus TM300

Site:
position = -322
score = 41.67
sequence = TTGATTCGGTGATAA...

Gene: Sca_0282: Threonyl-tRNA synthetase (EC 6.1.1.3)
*
Staphylococcus haemolyticus JCSC1435

Site:
position = -266
score = 77.55
sequence = ATTAATACATGATTG...

Gene: SH0134: Threonyl-tRNA synthetase (EC 6.1.1.3)
 
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305
 
Macrococcus caseolyticus JCSC5402
Threonyl-tRNA synthetase (EC 6.1.1.3)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD