Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Ser) - Bacillales

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Ser-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bacillus subtilis subsp. subtilis str. 168 1 1
Bacillus amyloliquefaciens FZB42 1 1
Bacillus pumilus SAFR-032 1 1
Bacillus licheniformis DSM 13 1 1
Anoxybacillus flavithermus WK1 1 1
Geobacillus kaustophilus HTA426 1 1
Bacillus cereus ATCC 14579 1 1
Bacillus halodurans C-125 2 2
Bacillus clausii KSM-K16 2 2
Oceanobacillus iheyensis HTE831 1 1
Paenibacillus sp. JDR-2 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
serA
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU23070: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_021220: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Bacillus pumilus SAFR-032

Gene: BPUM_2039: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Bacillus licheniformis DSM 13

Gene: BLi02446: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_1055: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Geobacillus kaustophilus HTA426

Gene: GK2247: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Bacillus cereus ATCC 14579
*
Bacillus halodurans C-125

Site:
position = -397
score = 107.61
sequence = CTTAAAAACGATGAC...

Gene: BH1602: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
*
Bacillus clausii KSM-K16

Site:
position = -274
score = 96.58
sequence = GCTAAAAACGATGAT...

Gene: ABC1843: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Oceanobacillus iheyensis HTE831

Gene: OB2626: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_2370: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
CRON 2.
serS
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -268
score = 138.97
sequence = GAAAAGCGTTGATAG...

Gene: BSU00130: Seryl-tRNA synthetase (EC 6.1.1.11)
*
Bacillus amyloliquefaciens FZB42

Site:
position = -266
score = 125.87
sequence = GAAAAGCGTTGACAG...

Gene: RBAM_000160: Seryl-tRNA synthetase (EC 6.1.1.11)
*
Bacillus pumilus SAFR-032

Site:
position = -265
score = 135.98
sequence = AAAAAGCGTTGACGG...

Gene: BPUM_0509: Seryl-tRNA synthetase (EC 6.1.1.11)
*
Bacillus licheniformis DSM 13

Site:
position = -275
score = 132.41
sequence = GAAAAGCGTTGATAG...

Gene: BLi00018: Seryl-tRNA synthetase (EC 6.1.1.11)
*
Anoxybacillus flavithermus WK1

Site:
position = -263
score = 142.97
sequence = AAAAAGCGATGACAG...

Gene: Aflv_0013: Seryl-tRNA synthetase (EC 6.1.1.11)
*
Geobacillus kaustophilus HTA426

Site:
position = -274
score = 129.04
sequence = CGAAAGCGATGAGAG...

Gene: GK0013: Seryl-tRNA synthetase (EC 6.1.1.11)
*
Bacillus cereus ATCC 14579

Site:
position = -272
score = 142.17
sequence = TAAGCGTGTTGATAG...

Gene: BC0017: Seryl-tRNA synthetase (EC 6.1.1.11)
*
Bacillus halodurans C-125

Site:
position = -269
score = 139.37
sequence = ACAATGCGTTGAGAG...

Gene: BH0024: Seryl-tRNA synthetase (EC 6.1.1.11)
 
Bacillus clausii KSM-K16

Gene: ABC0013: Seryl-tRNA synthetase (EC 6.1.1.11)
*
Oceanobacillus iheyensis HTE831

Site:
position = -282
score = 127.77
sequence = GAAATGTAACGATAG...

Gene: OB0012: Seryl-tRNA synthetase (EC 6.1.1.11)
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_0093: Seryl-tRNA synthetase (EC 6.1.1.11)
Seryl-tRNA synthetase (EC 6.1.1.11)
 
CRON 3.
serS2
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125
*
Bacillus clausii KSM-K16

Site:
position = -214
score = 53.98
sequence = CATCAGGCCAATGAA...

Gene: ABC1428: Seryl-tRNA synthetase (EC 6.1.1.11)
 
Oceanobacillus iheyensis HTE831
*
Paenibacillus sp. JDR-2

Site:
position = -217
score = 54.52
sequence = TTAGGCCGATGAAGA...

Gene: Pjdr2_6148: Seryl-tRNA synthetase (EC 6.1.1.11)
Seryl-tRNA synthetase (EC 6.1.1.11)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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