Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Phe) - Bacillales

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Phe-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bacillus subtilis subsp. subtilis str. 168 2 1
Bacillus amyloliquefaciens FZB42 2 1
Bacillus pumilus SAFR-032 2 1
Bacillus licheniformis DSM 13 2 1
Anoxybacillus flavithermus WK1 2 1
Geobacillus kaustophilus HTA426 2 1
Bacillus cereus ATCC 14579 2 1
Bacillus halodurans C-125 2 1
Bacillus clausii KSM-K16 2 1
Oceanobacillus iheyensis HTE831 2 1
Paenibacillus sp. JDR-2 2 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
pheS
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -311
score = 55.26
sequence = TTCAAAAACCGTGAC...

Gene: BSU28640: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
*
Bacillus amyloliquefaciens FZB42

Site:
position = -316
score = 62.44
sequence = TGTAAAAACCGTGAC...

Gene: RBAM_025710: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
*
Bacillus pumilus SAFR-032

Site:
position = -334
score = 73.08
sequence = TTTAAAAACCATGAT...

Gene: BPUM_2522: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
*
Bacillus licheniformis DSM 13

Site:
position = -316
score = 66.33
sequence = TTTAAAAACAGTGAT...

Gene: BLi03016: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
*
Anoxybacillus flavithermus WK1

Site:
position = -279
score = 122.64
sequence = AAAAAACGATGATCG...

Gene: Aflv_0542: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
*
Geobacillus kaustophilus HTA426

Site:
position = -336
score = 107.9
sequence = GACAACAACGATGAC...

Gene: GK2707: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
*
Bacillus cereus ATCC 14579

Site:
position = -274
score = 110.0
sequence = ACGAAAAACGTTGAT...

Gene: BC4561: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
*
Bacillus halodurans C-125

Site:
position = -368
score = 103.73
sequence = TGAAAATGCGTGGAA...

Gene: BH3111: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
*
Bacillus clausii KSM-K16

Site:
position = -278
score = 99.18
sequence = ATAAAAAGCGTTGAT...

Gene: ABC2680: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
*
Oceanobacillus iheyensis HTE831

Site:
position = -305
score = 88.16
sequence = AATACAAGCAATGAA...

Gene: OB2131: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
*
Paenibacillus sp. JDR-2

Site:
position = -314
score = 89.67
sequence = TGAAAGCTTTGATGG...

Gene: Pjdr2_1383: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
pheT
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU28630: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_025700: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
 
Bacillus pumilus SAFR-032

Gene: BPUM_2521: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
 
Bacillus licheniformis DSM 13

Gene: BLi03015: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_0543: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
 
Geobacillus kaustophilus HTA426

Gene: GK2706: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
 
Bacillus cereus ATCC 14579

Gene: BC4560: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
 
Bacillus halodurans C-125

Gene: BH3110: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
 
Bacillus clausii KSM-K16

Gene: ABC2679: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
 
Oceanobacillus iheyensis HTE831

Gene: OB2130: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_1384: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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