Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Met) - Bacillales

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Met-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bacillus subtilis subsp. subtilis str. 168
Bacillus amyloliquefaciens FZB42
Bacillus pumilus SAFR-032 4 1
Bacillus licheniformis DSM 13
Anoxybacillus flavithermus WK1
Geobacillus kaustophilus HTA426
Bacillus cereus ATCC 14579 1 1
Bacillus halodurans C-125 1 1
Bacillus clausii KSM-K16 1 1
Oceanobacillus iheyensis HTE831
Paenibacillus sp. JDR-2 2 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
metS
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU00380: Methionyl-tRNA synthetase (EC 6.1.1.10)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_000470: Methionyl-tRNA synthetase (EC 6.1.1.10)
 
Bacillus pumilus SAFR-032

Gene: BPUM_0022: Methionyl-tRNA synthetase (EC 6.1.1.10)
 
Bacillus licheniformis DSM 13

Gene: BLi00051: Methionyl-tRNA synthetase (EC 6.1.1.10)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_0032: Methionyl-tRNA synthetase (EC 6.1.1.10)
 
Geobacillus kaustophilus HTA426

Gene: GK0031: Methionyl-tRNA synthetase (EC 6.1.1.10)
*2
Bacillus cereus ATCC 14579

Gene: BC0043: Methionyl-tRNA synthetase (EC 6.1.1.10)

Site:
position = -322
score = 111.57
sequence = CGTAAAAGCGTTGAA...

Gene: BC5031: Methionyl-tRNA synthetase (EC 6.1.1.10)
*
Bacillus halodurans C-125

Site:
position = -346
score = 73.43
sequence = GAGTCCTGATGAAGG...

Gene: BH0053: Methionyl-tRNA synthetase (EC 6.1.1.10)
*
Bacillus clausii KSM-K16

Site:
position = -265
score = 68.42
sequence = GAATGTCTATGAACG...

Gene: ABC0061: Methionyl-tRNA synthetase (EC 6.1.1.10)
 
Oceanobacillus iheyensis HTE831

Gene: OB0046: Methionyl-tRNA synthetase (EC 6.1.1.10)
*2
Paenibacillus sp. JDR-2

Site:
position = -331
score = 75.43
sequence = CATATTCGATGAACG...

Gene: Pjdr2_2273: Methionyl-tRNA synthetase (EC 6.1.1.10)

Site:
position = -314
score = 95.53
sequence = TAATGGCAACGAAGA...

Gene: Pjdr2_3139: Methionyl-tRNA synthetase (EC 6.1.1.10)
Methionyl-tRNA synthetase (EC 6.1.1.10)
 
CRON 2.
BPUM_3680
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
*
Bacillus pumilus SAFR-032

Site:
position = -382
score = 110.2
sequence = TAAACAGGCAATGAC...

Gene: BPUM_3680: Hypothetical protein
 
Bacillus licheniformis DSM 13

Gene: BLi04329: Hypothetical protein
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831

Gene: OB1067: Hypothetical protein
 
Paenibacillus sp. JDR-2
Hypothetical protein
mtsA
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032

Gene: BPUM_3679: Substrate-specific component MtsA of methionine-regulated ECF transporter
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579

Gene: BC2654: Substrate-specific component MtsA of methionine-regulated ECF transporter
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Substrate-specific component MtsA of methionine-regulated ECF transporter
mtsB
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032

Gene: BPUM_3678: Duplicated ATPase component MtsB of energizing module of methionine-regulated ECF transporter
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579

Gene: BC2655: Duplicated ATPase component MtsB of energizing module of methionine-regulated ECF transporter
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Duplicated ATPase component MtsB of energizing module of methionine-regulated ECF transporter
mtsC
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032

Gene: BPUM_3677: Transmembrane component MtsC of energizing module of methionine-regulated ECF transporter
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579

Gene: BC2656: Transmembrane component MtsC of energizing module of methionine-regulated ECF transporter
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Transmembrane component MtsC of energizing module of methionine-regulated ECF transporter
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD