Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Met) - Staphylococcaceae

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Met-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Staphylococcus aureus subsp. aureus N315 5 1
Staphylococcus capitis SK14 5 1
Staphylococcus epidermidis ATCC 12228 5 1
Staphylococcus carnosus subsp. carnosus TM300 5 2
Staphylococcus haemolyticus JCSC1435 5 1
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 5 1
Macrococcus caseolyticus JCSC5402 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
metE2
 
Staphylococcus aureus subsp. aureus N315
 
Staphylococcus capitis SK14
 
Staphylococcus epidermidis ATCC 12228
*
Staphylococcus carnosus subsp. carnosus TM300

Site:
position = -309
score = 105.89
sequence = AAAAGATAAAGATGA...

Gene: Sca_0069: Methionine synthase II (cobalamin-independent)
 
Staphylococcus haemolyticus JCSC1435
 
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305
*
Macrococcus caseolyticus JCSC5402

Site:
position = -380
score = 92.52
sequence = ACAAAGCGATAAAAA...

Gene: MCCL_0261: Methionine synthase II (cobalamin-independent)
Methionine synthase II (cobalamin-independent)
 
CRON 2.
metI
*
Staphylococcus aureus subsp. aureus N315

Site:
position = -229
score = 35.66
sequence = GTTAATAAGTATGGG...

Site:
position = -434
score = 74.83
sequence = CGTAAACACAATAAA...

Gene: SA0347: Cystathionine gamma-synthase (EC 2.5.1.48)
*
Staphylococcus capitis SK14

Site:
position = -134
score = 38.27
sequence = TAGAGGTTACTTTAG...

Gene: STACA0001_1416: Cystathionine gamma-synthase (EC 2.5.1.48)
*
Staphylococcus epidermidis ATCC 12228

Site:
position = -131
score = 36.51
sequence = AGGTTACTTTAGTAA...

Gene: SE2379: Cystathionine gamma-synthase (EC 2.5.1.48)
 
Staphylococcus carnosus subsp. carnosus TM300
*
Staphylococcus haemolyticus JCSC1435

Site:
position = -135
score = 33.69
sequence = AGGTTACTTTAGCAA...

Gene: SH2635: Cystathionine gamma-synthase (EC 2.5.1.48)
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Site:
position = -431
score = 72.59
sequence = GAAACACAGTAACAA...

Gene: SSP2413: Cystathionine gamma-synthase (EC 2.5.1.48)
 
Macrococcus caseolyticus JCSC5402
Cystathionine gamma-synthase (EC 2.5.1.48)
metC
 
Staphylococcus aureus subsp. aureus N315

Gene: SA0346: Cystathionine beta-lyase (EC 4.4.1.8)
 
Staphylococcus capitis SK14

Gene: STACA0001_1415: Cystathionine beta-lyase (EC 4.4.1.8)
 
Staphylococcus epidermidis ATCC 12228

Gene: SE2380: Cystathionine beta-lyase (EC 4.4.1.8)
*
Staphylococcus carnosus subsp. carnosus TM300

Site:
position = -247
score = 39.81
sequence = GATTATTATAATAGC...

Gene: Sca_0014: Cystathionine beta-lyase (EC 4.4.1.8)
 
Staphylococcus haemolyticus JCSC1435

Gene: SH2636: Cystathionine beta-lyase (EC 4.4.1.8)
 
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Gene: SSP2414: Cystathionine beta-lyase (EC 4.4.1.8)
 
Macrococcus caseolyticus JCSC5402
Cystathionine beta-lyase (EC 4.4.1.8)
metF
 
Staphylococcus aureus subsp. aureus N315

Gene: SA0345: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) / Homolog of homocysteine-binding domain
 
Staphylococcus capitis SK14

Gene: STACA0001_1414: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) / Homolog of homocysteine-binding domain
 
Staphylococcus epidermidis ATCC 12228

Gene: SE2381: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) / Homolog of homocysteine-binding domain
 
Staphylococcus carnosus subsp. carnosus TM300

Gene: Sca_0013: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) / Homolog of homocysteine-binding domain
 
Staphylococcus haemolyticus JCSC1435

Gene: SH2637: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) / Homolog of homocysteine-binding domain
 
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Gene: SSP2415: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) / Homolog of homocysteine-binding domain
 
Macrococcus caseolyticus JCSC5402
5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) / Homolog of homocysteine-binding domain
metE
 
Staphylococcus aureus subsp. aureus N315

Gene: SA0344: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
 
Staphylococcus capitis SK14

Gene: STACA0001_1413: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
 
Staphylococcus epidermidis ATCC 12228

Gene: SE2382: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
 
Staphylococcus carnosus subsp. carnosus TM300

Gene: Sca_0012: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
 
Staphylococcus haemolyticus JCSC1435

Gene: SH2638: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
 
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Gene: SSP2416: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
 
Macrococcus caseolyticus JCSC5402
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
mdh
 
Staphylococcus aureus subsp. aureus N315

Gene: SA0343: Metal-dependent hydrolase/cyclase
 
Staphylococcus capitis SK14

Gene: STACA0001_1412: Metal-dependent hydrolase/cyclase
 
Staphylococcus epidermidis ATCC 12228

Gene: SE2383: Metal-dependent hydrolase/cyclase
 
Staphylococcus carnosus subsp. carnosus TM300

Gene: Sca_0011: Metal-dependent hydrolase/cyclase
 
Staphylococcus haemolyticus JCSC1435

Gene: SH2639: Metal-dependent hydrolase/cyclase
 
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Gene: SSP2417: Metal-dependent hydrolase/cyclase
 
Macrococcus caseolyticus JCSC5402
Metal-dependent hydrolase/cyclase
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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