Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Lys) - Bacillales

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Lys-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bacillus subtilis subsp. subtilis str. 168
Bacillus amyloliquefaciens FZB42 1 1
Bacillus pumilus SAFR-032 1 1
Bacillus licheniformis DSM 13
Anoxybacillus flavithermus WK1
Geobacillus kaustophilus HTA426
Bacillus cereus ATCC 14579 1 1
Bacillus halodurans C-125 1 1
Bacillus clausii KSM-K16 1 1
Oceanobacillus iheyensis HTE831
Paenibacillus sp. JDR-2 2 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
lysX
 
Bacillus subtilis subsp. subtilis str. 168
*
Bacillus amyloliquefaciens FZB42

Site:
position = -278
score = 85.57
sequence = CCGAAAAGCGCTGAA...

Gene: RBAM_024030: Lysine permease, MFS family
*
Bacillus pumilus SAFR-032

Site:
position = -295
score = 72.79
sequence = AGACATAGCGCTAAT...

Gene: BPUM_2348: Lysine permease, MFS family
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
*
Bacillus halodurans C-125

Site:
position = -331
score = 108.19
sequence = CTAACACGCGATGAA...

Gene: BH0807: Lysine permease, MFS family
*
Bacillus clausii KSM-K16

Site:
position = -324
score = 95.48
sequence = AAAAAATGCGATGAA...

Gene: ABC1998: Lysine permease, MFS family
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Lysine permease, MFS family
 
CRON 2.
glnS2
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032

Gene: BPUM_0312: Glutaminyl-tRNA synthetase paralog
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
*
Paenibacillus sp. JDR-2

Site:
position = -314
score = 92.94
sequence = TGGAAATGCGATGAC...

Gene: Pjdr2_4142: Glutaminyl-tRNA synthetase paralog
Glutaminyl-tRNA synthetase paralog
 
CRON 3.
asd
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
*
Paenibacillus sp. JDR-2

Site:
position = -382
score = 88.16
sequence = GAAATGCAACGACGA...

Gene: Pjdr2_2936: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
 
CRON 4.
lysS
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
*
Bacillus cereus ATCC 14579

Site:
position = -337
score = 99.86
sequence = TTAAGGCATAGAAGA...

Gene: BC2535: Lysyl-tRNA synthetase (class I) (EC 6.1.1.6)
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Lysyl-tRNA synthetase (class I) (EC 6.1.1.6)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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