Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Ile) - Bacillales

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Ile-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bacillus subtilis subsp. subtilis str. 168 1 1
Bacillus amyloliquefaciens FZB42 1 1
Bacillus pumilus SAFR-032 1 1
Bacillus licheniformis DSM 13 1 1
Anoxybacillus flavithermus WK1 1 1
Geobacillus kaustophilus HTA426 1 1
Bacillus cereus ATCC 14579 8 4
Bacillus halodurans C-125 1 1
Bacillus clausii KSM-K16 1 1
Oceanobacillus iheyensis HTE831 10 3
Paenibacillus sp. JDR-2 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ileS2
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
*
Bacillus cereus ATCC 14579

Site:
position = -287
score = 124.5
sequence = CAAATCTGAAGACGA...

Gene: BC2164: Isoleucyl-tRNA synthetase (EC 6.1.1.5)
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
*
Oceanobacillus iheyensis HTE831

Site:
position = -291
score = 90.9
sequence = TGAATTCGATGACGA...

Gene: OB0362: Isoleucyl-tRNA synthetase (EC 6.1.1.5)
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_3873: Isoleucyl-tRNA synthetase (EC 6.1.1.5)
Isoleucyl-tRNA synthetase (EC 6.1.1.5)
 
CRON 2.
brnQ
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
*
Bacillus cereus ATCC 14579

Site:
position = -278
score = 123.15
sequence = TAAAAATTCATTGAC...

Gene: BC1441: Branched-chain amino acid transport system carrier protein BraB
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Branched-chain amino acid transport system carrier protein BraB
 
CRON 3.
Pjdr2_4149
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
*
Paenibacillus sp. JDR-2

Site:
position = -282
score = 119.75
sequence = GCGAAATGCGATGAC...

Gene: Pjdr2_4149: GCN5-related N-acetyltransferase
GCN5-related N-acetyltransferase
 
CRON 4.
ilvB
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU28310: Acetolactate synthase large subunit (EC 2.2.1.6)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_025370: Acetolactate synthase large subunit (EC 2.2.1.6)
 
Bacillus pumilus SAFR-032

Gene: BPUM_2472: Acetolactate synthase large subunit (EC 2.2.1.6)
 
Bacillus licheniformis DSM 13

Gene: BLi02961: Acetolactate synthase large subunit (EC 2.2.1.6)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_0591: Acetolactate synthase large subunit (EC 2.2.1.6)
 
Geobacillus kaustophilus HTA426

Gene: GK2661: Acetolactate synthase large subunit (EC 2.2.1.6)
 
Bacillus cereus ATCC 14579

Gene: BC1777: Acetolactate synthase large subunit (EC 2.2.1.6)
 
Bacillus halodurans C-125

Gene: BH3061: Acetolactate synthase large subunit (EC 2.2.1.6)
 
Bacillus clausii KSM-K16

Gene: ABC2645: Acetolactate synthase large subunit (EC 2.2.1.6)
*
Oceanobacillus iheyensis HTE831

Site:
position = -384
score = 63.67
sequence = CGTTAATTCGTTGAC...

Gene: OB2623: Acetolactate synthase large subunit (EC 2.2.1.6)
 3
Paenibacillus sp. JDR-2

Gene: Pjdr2_2907: Acetolactate synthase large subunit (EC 2.2.1.6)

Gene: Pjdr2_1302: Acetolactate synthase large subunit (EC 2.2.1.6)

Gene: Pjdr2_4086: Acetolactate synthase large subunit (EC 2.2.1.6)
Acetolactate synthase large subunit (EC 2.2.1.6)
ilvH
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU28300: Acetolactate synthase small subunit (EC 2.2.1.6)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_025360: Acetolactate synthase small subunit (EC 2.2.1.6)
 
Bacillus pumilus SAFR-032

Gene: BPUM_2471: Acetolactate synthase small subunit (EC 2.2.1.6)
 
Bacillus licheniformis DSM 13

Gene: BLi02960: Acetolactate synthase small subunit (EC 2.2.1.6)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_0592: Acetolactate synthase small subunit (EC 2.2.1.6)
 
Geobacillus kaustophilus HTA426

Gene: GK2660: Acetolactate synthase small subunit (EC 2.2.1.6)
 
Bacillus cereus ATCC 14579

Gene: BC1398: Acetolactate synthase small subunit (EC 2.2.1.6)
 
Bacillus halodurans C-125

Gene: BH3060: Acetolactate synthase small subunit (EC 2.2.1.6)
 
Bacillus clausii KSM-K16

Gene: ABC2644: Acetolactate synthase small subunit (EC 2.2.1.6)
 
Oceanobacillus iheyensis HTE831

Gene: OB2622: Acetolactate synthase small subunit (EC 2.2.1.6)
 2
Paenibacillus sp. JDR-2

Gene: Pjdr2_2908: Acetolactate synthase small subunit (EC 2.2.1.6)

Gene: Pjdr2_1303: Acetolactate synthase small subunit (EC 2.2.1.6)
Acetolactate synthase small subunit (EC 2.2.1.6)
ilvC
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU28290: Ketol-acid reductoisomerase (EC 1.1.1.86)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_025350: Ketol-acid reductoisomerase (EC 1.1.1.86)
 
Bacillus pumilus SAFR-032

Gene: BPUM_2470: Ketol-acid reductoisomerase (EC 1.1.1.86)
 
Bacillus licheniformis DSM 13

Gene: BLi02959: Ketol-acid reductoisomerase (EC 1.1.1.86)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_0593: Ketol-acid reductoisomerase (EC 1.1.1.86)
 
Geobacillus kaustophilus HTA426

Gene: GK2659: Ketol-acid reductoisomerase (EC 1.1.1.86)
 2
Bacillus cereus ATCC 14579

Gene: BC1399: Ketol-acid reductoisomerase (EC 1.1.1.86)

Gene: BC1779: Ketol-acid reductoisomerase (EC 1.1.1.86)
 
Bacillus halodurans C-125

Gene: BH3059: Ketol-acid reductoisomerase (EC 1.1.1.86)
 
Bacillus clausii KSM-K16

Gene: ABC2643: Ketol-acid reductoisomerase (EC 1.1.1.86)
 
Oceanobacillus iheyensis HTE831

Gene: OB2621: Ketol-acid reductoisomerase (EC 1.1.1.86)
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_1304: Ketol-acid reductoisomerase (EC 1.1.1.86)
Ketol-acid reductoisomerase (EC 1.1.1.86)
leuA
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU28280: 2-isopropylmalate synthase (EC 2.3.3.13)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_025340: 2-isopropylmalate synthase (EC 2.3.3.13)
 
Bacillus pumilus SAFR-032

Gene: BPUM_2469: 2-isopropylmalate synthase (EC 2.3.3.13)
 
Bacillus licheniformis DSM 13

Gene: BLi02958: 2-isopropylmalate synthase (EC 2.3.3.13)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_0594: 2-isopropylmalate synthase (EC 2.3.3.13)
 
Geobacillus kaustophilus HTA426

Gene: GK2658: 2-isopropylmalate synthase (EC 2.3.3.13)
 
Bacillus cereus ATCC 14579

Gene: BC1400: 2-isopropylmalate synthase (EC 2.3.3.13)
 
Bacillus halodurans C-125

Gene: BH3058: 2-isopropylmalate synthase (EC 2.3.3.13)
 
Bacillus clausii KSM-K16

Gene: ABC2642: 2-isopropylmalate synthase (EC 2.3.3.13)
 
Oceanobacillus iheyensis HTE831

Gene: OB2620: 2-isopropylmalate synthase (EC 2.3.3.13)
 2
Paenibacillus sp. JDR-2

Gene: Pjdr2_1305: 2-isopropylmalate synthase (EC 2.3.3.13)

Gene: Pjdr2_1026: 2-isopropylmalate synthase (EC 2.3.3.13)
2-isopropylmalate synthase (EC 2.3.3.13)
leuB
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU28270: 3-isopropylmalate dehydrogenase (EC 1.1.1.85)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_025330: 3-isopropylmalate dehydrogenase (EC 1.1.1.85)
 
Bacillus pumilus SAFR-032

Gene: BPUM_2468: 3-isopropylmalate dehydrogenase (EC 1.1.1.85)
 
Bacillus licheniformis DSM 13

Gene: BLi02957: 3-isopropylmalate dehydrogenase (EC 1.1.1.85)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_0595: 3-isopropylmalate dehydrogenase (EC 1.1.1.85)
 
Geobacillus kaustophilus HTA426

Gene: GK2657: 3-isopropylmalate dehydrogenase (EC 1.1.1.85)
 
Bacillus cereus ATCC 14579

Gene: BC1401: 3-isopropylmalate dehydrogenase (EC 1.1.1.85)
 
Bacillus halodurans C-125

Gene: BH3057: 3-isopropylmalate dehydrogenase (EC 1.1.1.85)
 
Bacillus clausii KSM-K16

Gene: ABC2641: 3-isopropylmalate dehydrogenase (EC 1.1.1.85)
 
Oceanobacillus iheyensis HTE831

Gene: OB2619: 3-isopropylmalate dehydrogenase (EC 1.1.1.85)
 
Paenibacillus sp. JDR-2
3-isopropylmalate dehydrogenase (EC 1.1.1.85)
leuC
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU28260: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_025320: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
 
Bacillus pumilus SAFR-032

Gene: BPUM_2467: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
 
Bacillus licheniformis DSM 13

Gene: BLi02956: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_0596: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
 
Geobacillus kaustophilus HTA426

Gene: GK2656: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
 
Bacillus cereus ATCC 14579

Gene: BC1402: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
 
Bacillus halodurans C-125

Gene: BH3056: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
 
Bacillus clausii KSM-K16

Gene: ABC2640: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
 
Oceanobacillus iheyensis HTE831

Gene: OB2618: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_2473: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
leuD
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU28250: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_025310: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
 
Bacillus pumilus SAFR-032

Gene: BPUM_2466: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
 
Bacillus licheniformis DSM 13

Gene: BLi02955: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_0597: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
 
Geobacillus kaustophilus HTA426

Gene: GK2655: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
 
Bacillus cereus ATCC 14579

Gene: BC1403: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
 
Bacillus halodurans C-125

Gene: BH3055: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
 
Bacillus clausii KSM-K16

Gene: ABC2639: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
 
Oceanobacillus iheyensis HTE831

Gene: OB2617: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_2474: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
ilvA
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1

Gene: Aflv_1393: Threonine dehydratase (EC 4.3.1.19)
 
Geobacillus kaustophilus HTA426

Gene: GK1591: Threonine dehydratase (EC 4.3.1.19)
 2
Bacillus cereus ATCC 14579

Gene: BC2400: Threonine dehydratase (EC 4.3.1.19)

Gene: BC1781: Threonine dehydratase (EC 4.3.1.19)
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831

Gene: OB2616: Threonine dehydratase (EC 4.3.1.19)
 
Paenibacillus sp. JDR-2
Threonine dehydratase (EC 4.3.1.19)
ilvE
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
*
Bacillus cereus ATCC 14579

Site:
position = -411
score = 97.28
sequence = AGAATGCGTAGAAGA...

Gene: BC1776: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Branched-chain amino acid aminotransferase (EC 2.6.1.42)
ilvD
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU21870: Dihydroxy-acid dehydratase (EC 4.2.1.9)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_020010: Dihydroxy-acid dehydratase (EC 4.2.1.9)
 
Bacillus pumilus SAFR-032

Gene: BPUM_1922: Dihydroxy-acid dehydratase (EC 4.2.1.9)
 
Bacillus licheniformis DSM 13

Gene: BLi02324: Dihydroxy-acid dehydratase (EC 4.2.1.9)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_1238: Dihydroxy-acid dehydratase (EC 4.2.1.9)
 
Geobacillus kaustophilus HTA426

Gene: GK2046: Dihydroxy-acid dehydratase (EC 4.2.1.9)
 
Bacillus cereus ATCC 14579

Gene: BC1780: Dihydroxy-acid dehydratase (EC 4.2.1.9)
 
Bacillus halodurans C-125

Gene: BH3062: Dihydroxy-acid dehydratase (EC 4.2.1.9)
 
Bacillus clausii KSM-K16

Gene: ABC2646: Dihydroxy-acid dehydratase (EC 4.2.1.9)
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_4335: Dihydroxy-acid dehydratase (EC 4.2.1.9)
Dihydroxy-acid dehydratase (EC 4.2.1.9)
 
CRON 5.
ileS
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -278
score = 104.73
sequence = AAAAAACGGTTGAAA...

Gene: BSU15430: Isoleucyl-tRNA synthetase (EC 6.1.1.5)
*
Bacillus amyloliquefaciens FZB42

Site:
position = -280
score = 97.17
sequence = AAAAGACGATTGAAA...

Gene: RBAM_015260: Isoleucyl-tRNA synthetase (EC 6.1.1.5)
*
Bacillus pumilus SAFR-032

Site:
position = -290
score = 107.02
sequence = GATAAACGTTTGAAA...

Gene: BPUM_1442: Isoleucyl-tRNA synthetase (EC 6.1.1.5)
*
Bacillus licheniformis DSM 13

Site:
position = -280
score = 100.21
sequence = GAAAAACGTTTGAGA...

Gene: BLi01762: Isoleucyl-tRNA synthetase (EC 6.1.1.5)
*
Anoxybacillus flavithermus WK1

Site:
position = -262
score = 133.42
sequence = GCAAAAAACGATGAA...

Gene: Aflv_1812: Isoleucyl-tRNA synthetase (EC 6.1.1.5)
*
Geobacillus kaustophilus HTA426

Site:
position = -273
score = 110.63
sequence = CATCGACGATGAAAG...

Gene: GK1136: Isoleucyl-tRNA synthetase (EC 6.1.1.5)
*
Bacillus cereus ATCC 14579

Site:
position = -296
score = 120.33
sequence = AAGAAAAACGAAGAT...

Gene: BC3895: Isoleucyl-tRNA synthetase (EC 6.1.1.5)
*
Bacillus halodurans C-125

Site:
position = -330
score = 104.57
sequence = ACAATGGACGATGAG...

Gene: BH2545: Isoleucyl-tRNA synthetase (EC 6.1.1.5)
*
Bacillus clausii KSM-K16

Site:
position = -291
score = 88.65
sequence = GTTAAAAACAAGGAT...

Gene: ABC2342: Isoleucyl-tRNA synthetase (EC 6.1.1.5)
*
Oceanobacillus iheyensis HTE831

Site:
position = -262
score = 127.95
sequence = TAAAAGCAATGATAG...

Gene: OB1484: Isoleucyl-tRNA synthetase (EC 6.1.1.5)
 
Paenibacillus sp. JDR-2
Isoleucyl-tRNA synthetase (EC 6.1.1.5)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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