Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Cys) - Bacillales

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Cys-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bacillus subtilis subsp. subtilis str. 168 2 1
Bacillus amyloliquefaciens FZB42 2 1
Bacillus pumilus SAFR-032 2 1
Bacillus licheniformis DSM 13 2 1
Anoxybacillus flavithermus WK1 2 1
Geobacillus kaustophilus HTA426 2 1
Bacillus cereus ATCC 14579 2 1
Bacillus halodurans C-125 2 1
Bacillus clausii KSM-K16 2 1
Oceanobacillus iheyensis HTE831 3 1
Paenibacillus sp. JDR-2 2 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
OB0097
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
*
Oceanobacillus iheyensis HTE831

Site:
position = -180
score = 109.11
sequence = ATAAAACGTAGAAGA...

Gene: OB0097: Hypothetical protein
 
Paenibacillus sp. JDR-2
Hypothetical protein
cysE
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -298
score = 102.56
sequence = AATGATTGTTGACAG...

Gene: BSU00930: Serine acetyltransferase (EC 2.3.1.30)
*
Bacillus amyloliquefaciens FZB42

Site:
position = -307
score = 104.59
sequence = TACGATTGTTGACAG...

Gene: RBAM_001180: Serine acetyltransferase (EC 2.3.1.30)
*
Bacillus pumilus SAFR-032

Site:
position = -311
score = 101.54
sequence = GGAAATCGTTGCGAG...

Gene: BPUM_0078: Serine acetyltransferase (EC 2.3.1.30)
*
Bacillus licheniformis DSM 13

Site:
position = -300
score = 102.92
sequence = ATAAATCGTTGACAG...

Gene: BLi00111: Serine acetyltransferase (EC 2.3.1.30)
*
Anoxybacillus flavithermus WK1

Site:
position = -245
score = 114.31
sequence = TGAAAGCGTTGATGA...

Gene: Aflv_0083: Serine acetyltransferase (EC 2.3.1.30)
*
Geobacillus kaustophilus HTA426

Site:
position = -295
score = 95.96
sequence = AAAAAGCGTTGACGA...

Gene: GK0084: Serine acetyltransferase (EC 2.3.1.30)
*
Bacillus cereus ATCC 14579

Site:
position = -396
score = 110.36
sequence = GAAAAGCGACGAGAA...

Gene: BC0109: Serine acetyltransferase (EC 2.3.1.30)
*
Bacillus halodurans C-125

Site:
position = -312
score = 103.89
sequence = AAAGCGCGTTGAAGA...

Gene: BH0110: Serine acetyltransferase (EC 2.3.1.30)
*
Bacillus clausii KSM-K16

Site:
position = -270
score = 86.08
sequence = ACAAAACGTTGAATG...

Gene: ABC0128: Serine acetyltransferase (EC 2.3.1.30)
 
Oceanobacillus iheyensis HTE831

Gene: OB0098: Serine acetyltransferase (EC 2.3.1.30)
*
Paenibacillus sp. JDR-2

Site:
position = -456
score = 48.31
sequence = TTAAAAAGCCATGAA...

Gene: Pjdr2_5705: Serine acetyltransferase (EC 2.3.1.30)
Serine acetyltransferase (EC 2.3.1.30)
cysS
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU00940: Cysteinyl-tRNA synthetase (EC 6.1.1.16)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_001190: Cysteinyl-tRNA synthetase (EC 6.1.1.16)
 
Bacillus pumilus SAFR-032

Gene: BPUM_0079: Cysteinyl-tRNA synthetase (EC 6.1.1.16)
 
Bacillus licheniformis DSM 13

Gene: BLi00112: Cysteinyl-tRNA synthetase (EC 6.1.1.16)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_0084: Cysteinyl-tRNA synthetase (EC 6.1.1.16)
 
Geobacillus kaustophilus HTA426

Gene: GK0085: Cysteinyl-tRNA synthetase (EC 6.1.1.16)
 
Bacillus cereus ATCC 14579

Gene: BC0110: Cysteinyl-tRNA synthetase (EC 6.1.1.16)
 
Bacillus halodurans C-125

Gene: BH0111: Cysteinyl-tRNA synthetase (EC 6.1.1.16)
 
Bacillus clausii KSM-K16

Gene: ABC0129: Cysteinyl-tRNA synthetase (EC 6.1.1.16)
 
Oceanobacillus iheyensis HTE831

Gene: OB0099: Cysteinyl-tRNA synthetase (EC 6.1.1.16)
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_5704: Cysteinyl-tRNA synthetase (EC 6.1.1.16)
Cysteinyl-tRNA synthetase (EC 6.1.1.16)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulatory Sites [ FASTA format ] DOWNLOAD