Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Asn) - Staphylococcaceae

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Asn-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Staphylococcus aureus subsp. aureus N315 2 1
Staphylococcus capitis SK14 2 1
Staphylococcus epidermidis ATCC 12228 2 1
Staphylococcus carnosus subsp. carnosus TM300 2 1
Staphylococcus haemolyticus JCSC1435 2 1
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 2 1
Macrococcus caseolyticus JCSC5402 2 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
hisS
*
Staphylococcus aureus subsp. aureus N315

Site:
position = -366
score = 49.83
sequence = AATCTAACTAAGATT...

Gene: SA1457: Histidyl-tRNA synthetase (EC 6.1.1.21)
*
Staphylococcus capitis SK14

Site:
position = -326
score = 46.56
sequence = ATTATTCTTGGAAGA...

Gene: STACA0001_2389: Histidyl-tRNA synthetase (EC 6.1.1.21)
*
Staphylococcus epidermidis ATCC 12228

Site:
position = -322
score = 55.64
sequence = AATAAAACCGATATG...

Gene: SE1312: Histidyl-tRNA synthetase (EC 6.1.1.21)
*
Staphylococcus carnosus subsp. carnosus TM300

Site:
position = -186
score = 51.82
sequence = ATTGAACACAAGAAG...

Gene: Sca_1242: Histidyl-tRNA synthetase (EC 6.1.1.21)
*
Staphylococcus haemolyticus JCSC1435

Site:
position = -291
score = 58.07
sequence = TGAAAGTATAAATGA...

Gene: SH1290: Histidyl-tRNA synthetase (EC 6.1.1.21)
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Site:
position = -172
score = 54.15
sequence = TATAACACAAGAACA...

Gene: SSP1128: Histidyl-tRNA synthetase (EC 6.1.1.21)
*
Macrococcus caseolyticus JCSC5402

Site:
position = -251
score = 85.87
sequence = ATATCAACCGTTATG...

Gene: MCCL_1268: Histidyl-tRNA synthetase (EC 6.1.1.21)
Histidyl-tRNA synthetase (EC 6.1.1.21)
aspS
 
Staphylococcus aureus subsp. aureus N315

Gene: SA1456: Aspartyl-tRNA synthetase (EC 6.1.1.12)
 
Staphylococcus capitis SK14

Gene: STACA0001_2390: Aspartyl-tRNA synthetase (EC 6.1.1.12)
 
Staphylococcus epidermidis ATCC 12228

Gene: SE1311: Aspartyl-tRNA synthetase (EC 6.1.1.12)
 
Staphylococcus carnosus subsp. carnosus TM300

Gene: Sca_1241: Aspartyl-tRNA synthetase (EC 6.1.1.12)
 
Staphylococcus haemolyticus JCSC1435

Gene: SH1291: Aspartyl-tRNA synthetase (EC 6.1.1.12)
 
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Gene: SSP1129: Aspartyl-tRNA synthetase (EC 6.1.1.12)
 
Macrococcus caseolyticus JCSC5402

Gene: MCCL_1267: Aspartyl-tRNA synthetase (EC 6.1.1.12)
Aspartyl-tRNA synthetase (EC 6.1.1.12)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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