Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Ala) - Staphylococcaceae

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Ala-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Staphylococcus aureus subsp. aureus N315 1 1
Staphylococcus capitis SK14 1 1
Staphylococcus epidermidis ATCC 12228 1 1
Staphylococcus carnosus subsp. carnosus TM300 1 1
Staphylococcus haemolyticus JCSC1435 1 1
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 1 1
Macrococcus caseolyticus JCSC5402 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
alaS
*
Staphylococcus aureus subsp. aureus N315

Site:
position = -310
score = 90.55
sequence = AATTCGTATAAAGAT...

Gene: SA1446: Alanyl-tRNA synthetase (EC 6.1.1.7)
*
Staphylococcus capitis SK14

Site:
position = -302
score = 76.86
sequence = TTCACATAAAGATGA...

Gene: STACA0001_2401: Alanyl-tRNA synthetase (EC 6.1.1.7)
*
Staphylococcus epidermidis ATCC 12228

Site:
position = -296
score = 77.56
sequence = AGTAAGTATAGAGAC...

Gene: SE1301: Alanyl-tRNA synthetase (EC 6.1.1.7)
*
Staphylococcus carnosus subsp. carnosus TM300

Site:
position = -246
score = 96.49
sequence = AATTCGCATAAAGAT...

Gene: Sca_1230: Alanyl-tRNA synthetase (EC 6.1.1.7)
*
Staphylococcus haemolyticus JCSC1435

Site:
position = -264
score = 74.21
sequence = TTCGCATGAAGATGA...

Gene: SH1301: Alanyl-tRNA synthetase (EC 6.1.1.7)
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Site:
position = -313
score = 72.21
sequence = TTCACATAAAGATGA...

Gene: SSP1143: Alanyl-tRNA synthetase (EC 6.1.1.7)
*
Macrococcus caseolyticus JCSC5402

Site:
position = -209
score = 85.22
sequence = ATATACTTTAAAGAT...

Gene: MCCL_1258: Alanyl-tRNA synthetase (EC 6.1.1.7)
Alanyl-tRNA synthetase (EC 6.1.1.7)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD