Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulons of Lactobacillus fermentum IFO 3956

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF AraR Arabinose Arabinose utilization 3 3
TF ArgR Arginine Arginine degradation; Arginine biosynthesis 4 4
TF BirA Biotin Biotin biosynthesis 1 1
TF CcpA HPr, phosphocarrier protein; Fructose-1,6-bisphosphate Carbon catabolism 30 37
TF CopR Copper ion, (Cu2+) Copper homeostasis 2 3
TF CtsR Heat shock Heat shock response 4 4
TF DeoR Deoxyribose-5-phosphate Deoxynucleoside utilization 2 2
TF FabT Long-chain acyl-ACP Fatty acid biosynthesis 1 1
TF FlpA Oxygen Heavy metal resistance 4 4
TF GalR Galactose Galactosides utilization; Galactose utilization 1 1
TF GntR2 Gluconate Gluconate utilization 1 1
TF HrcA Heat shock Heat shock response 4 4
TF LacR Lactose Lactose utilization 2 2
TF LexA DNA damage SOS response 5 5
TF Lp_2742 Multidrug efflux; Multidrug resistance 1 1
TF MalR Maltose Maltose utilization; Maltodextrin utilization 1 1
TF MalR3 Maltose Maltose utilization; Maltodextrin utilization 2 2
TF MntR Manganese ion, (Mn2+) Manganese homeostasis 1 1
TF NagR N-acetylglucosamine-6-phosphate N-acetylglucosamine utilization 1 1
TF NihR Nickel homeostasis 2 2
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 3 5
TF NrtR Adenosine diphosphate ribose NAD biosynthesis 1 1
TF PerR Iron ion, (Fe2+); Manganese ion, (Mn2+); Hydrogen peroxide Manganese homeostasis; Oxidative stress response; Iron homeostasis 4 6
TF PurR 5-phosphoribosyl 1-pyrophosphate Purine metabolism 5 5
TF RbsR Ribose Ribose utilization 3 3
TF Rex NADH Energy metabolism 4 6
TF ScrR Sucrose-6-phosphate Sucrose utilization 2 2
TF XylR Xylose Xylose utilization 3 3
TF YxeR Antibiotic resistance 1 2
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 3 3
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 2 2
RNA L10_leader Ribosome biogenesis 1 1
RNA L19_leader Ribosome biogenesis 1 1
RNA L20_leader Ribosome biogenesis 1 1
RNA L21_leader Ribosome biogenesis 1 1
RNA Lysine Lysine Lysine biosynthesis 2 2
RNA Purine Adenine; Guanine Purine metabolism 1 1
RNA PyrR PyrR Pyrimidine metabolism 5 6
RNA SMK_box_riboswitch S-adenosylmethionine Methionine metabolism 1 1
RNA T-box(Ala) Ala-tRNA Amino acid metabolism 1 1
RNA T-box(Arg) Arg-tRNA Amino acid metabolism 1 1
RNA T-box(Asn) Asn-tRNA Amino acid metabolism 1 1
RNA T-box(Asp) Asp-tRNA Amino acid metabolism 1 1
RNA T-box(Gly) Gly-tRNA Amino acid metabolism 1 1
RNA T-box(His) His-tRNA Amino acid metabolism 1 1
RNA T-box(Ile) Ile-tRNA Amino acid metabolism 2 2
RNA T-box(Leu) Leu-tRNA Amino acid metabolism 1 1
RNA T-box(Met) Met-tRNA Amino acid metabolism 6 6
RNA T-box(Phe) Phe-tRNA Amino acid metabolism 1 1
RNA T-box(Ser) Ser-tRNA Amino acid metabolism 1 1
RNA T-box(Thr) Thr-tRNA Amino acid metabolism 1 1
RNA T-box(Trp) Trp-tRNA Amino acid metabolism 1 1
RNA T-box(Tyr) Tyr-tRNA Amino acid metabolism 1 1
RNA T-box(Val) Val-tRNA Amino acid metabolism 2 2
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 3 3
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