Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulons of Lactobacillus casei ATCC 334

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF ArgR Arginine Arginine degradation; Arginine biosynthesis 2 2
TF CcpA HPr, phosphocarrier protein; Fructose-1,6-bisphosphate Carbon catabolism 31 38
TF CcpB unknown 1 1
TF CcpN Gluconeogenesis 1 2
TF CggR Fructose-1,6-bisphosphate Glycolysis 1 1
TF CopR Copper ion, (Cu2+) Copper homeostasis 2 4
TF CtsR Heat shock Heat shock response 3 3
TF FabT Long-chain acyl-ACP Fatty acid biosynthesis 1 1
TF FatR Oleate; Gamma-linolenic acid; Linoleate; Phytanate Toxic fatty acid stress response 1 1
TF FlpA Oxygen Heavy metal resistance 2 2
TF FruR Fructose-6-phosphate Fructose utilization 1 2
TF GalR Galactose Galactosides utilization; Galactose utilization 1 1
TF GlnR Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 4 4
TF GntR1 Gluconate Gluconate utilization 2 4
TF GutR HPr, phosphocarrier protein; GutB, sorbitol-specific PTS EIIB component Sorbitol utilization 1 1
TF HrcA Heat shock Heat shock response 5 5
TF LSEI_0081 Transport 2 2
TF LSEI_0368 Sugar utilization 2 4
TF LacR D-galactose-6-phosphate Lactose utilization 1 1
TF LexA DNA damage SOS response 9 11
TF Lp_3221 Sugar utilization 2 2
TF MdxR Maltose Maltose utilization; Maltodextrin utilization 2 2
TF MleR L-malate Malate utilization 2 2
TF MntR Manganese ion, (Mn2+) Manganese homeostasis 2 2
TF MtlR HPr, phosphocarrier protein; MtlA, mannitol-specific enzyme IICB PTS component Mannitol utilization 1 1
TF NagR N-acetylglucosamine-6-phosphate N-acetylglucosamine utilization 3 5
TF NiaR Niacin NAD biosynthesis 1 1
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 5 7
TF NrtR Adenosine diphosphate ribose NAD biosynthesis 1 1
TF OglR2 Oligoglucoside utilization 1 1
TF PerR Iron ion, (Fe2+); Manganese ion, (Mn2+); Hydrogen peroxide Manganese homeostasis; Oxidative stress response; Iron homeostasis 5 6
TF PurR 5-phosphoribosyl 1-pyrophosphate Purine metabolism 5 6
TF RbsR Ribose Ribose utilization 1 1
TF Rex NADH Energy metabolism 3 6
TF RpiR Sugar utilization 2 2
TF TagR Tagatose-6-phosphate Tagatose utilization 2 2
TF TreR Trehalose-6-phosphate Trehalose utilization 1 1
TF YhcF Multidrug resistance; Multidrug efflux 1 1
TF YtrA Hypothetical ABC transporter 1 1
TF YxeR Antibiotic resistance 1 2
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 5 7
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 1 1
RNA L10_leader Ribosome biogenesis 1 1
RNA L13_leader Ribosome biogenesis 1 1
RNA L19_leader Ribosome biogenesis 1 1
RNA L20_leader Ribosome biogenesis 1 1
RNA L21_leader Ribosome biogenesis 1 1
RNA Lysine Lysine Lysine biosynthesis 2 2
RNA PyrR PyrR Pyrimidine metabolism 1 1
RNA SMK_box_riboswitch S-adenosylmethionine Methionine metabolism 1 1
RNA T-box(Ala) Ala-tRNA Amino acid metabolism 1 1
RNA T-box(Arg) Arg-tRNA Amino acid metabolism 1 1
RNA T-box(Asp) Asp-tRNA Amino acid metabolism 1 1
RNA T-box(Gly) Gly-tRNA Amino acid metabolism 1 1
RNA T-box(His) His-tRNA Amino acid metabolism 1 1
RNA T-box(Ile) Ile-tRNA Amino acid metabolism 1 1
RNA T-box(Leu) Leu-tRNA Amino acid metabolism 1 1
RNA T-box(Met) Met-tRNA Amino acid metabolism 4 4
RNA T-box(Phe) Phe-tRNA Amino acid metabolism 1 1
RNA T-box(Pro) Pro-tRNA Amino acid metabolism 1 1
RNA T-box(Ser) Ser-tRNA Amino acid metabolism 1 1
RNA T-box(Thr) Thr-tRNA Amino acid metabolism 1 1
RNA T-box(Trp) Trp-tRNA Amino acid metabolism 3 3
RNA T-box(Tyr) Tyr-tRNA Amino acid metabolism 1 1
RNA T-box(Val) Val-tRNA Amino acid metabolism 2 2
RNA THF Tetrahydrofolate Folate metabolism 1 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 2 2
RNA preQ1-II Pre-queuosine Queuosine biosynthesis 1 1
RNA yybP-ykoY 1 1
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